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Acidobacteria

Karalystė:	Bakterijos ( Bacteria)
Tipas:	Acidobacteria ( Acidobacteria)

Acidobacteria (liet. Acidobakterijos) - bakterijų tipas. Acidobakterijos yra fiziologiškai skirtingos ir visur išplitusios, dažniausiai dirvožemyje.^[1]^[2]^[3]

Aprašymas

Šio tipo nariai yra fiziologiškai įvairūs ir aptinkami įvairiausiose aplinkose, įskaitant dirvožemį, karštąsias versmes, vandenynus, urvus ir metalu užterštus dirvožemius.^[4] Daugybė acidobakterijų yra acidofilai - klesti esant labai rūgštinėms sąlygoms, įskaitant ir pirmąją aprašytą šio tipo rūšį Acidobacterium capsulatum.^[5]

Kitos žinomos rūšys yra Holophaga foetida,^[6] Geothrix fermentans,^[7] Acanthopleuribacter pedis^[8] ir Bryobacter aggregatus.^[9] Kadangi acidobakterijos buvo atrastos nesenai ir didžioji dauguma jų dar nebuvo auginamos, šių bakterijų ekologija ir metabolizmas iki galo nėra suprastas.^[2] Tačiau šios bakterijos gali būti svarbus veiksnys ekosistemoje, kadangi jų yra ypač gausu dirvožemyje.^[10]

Istorija

Pirmoji acidobakterijų rūšis, Acidobacterium capsulatum, atrasta 1991 m.^[11]

Šaltiniai

↑ Barns SM; Cain EC; Sommerville L; Kuske CR (2007). „Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum“. Appl. Environ. Microbiol. 73 (9): 3113–6. doi:10.1128/AEM.02012-06. PMC 1892891. PMID 17337544.
↑ ^2,0 ^2,1 Quaiser A; Ochsenreiter T; Lanz C; et al. (2003). „Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics“. Mol. Microbiol. 50 (2): 563–75. doi:10.1046/j.1365-2958.2003.03707.x. PMID 14617179.
↑ Rappe, M. S.; Giovannoni, S. J. (2003). „The Uncultured Microbial Majority“. Annual Review of Microbiology. 57: 369–394. doi:10.1146/annurev.micro.57.030502.090759. PMID 14527284.
↑ Thrash JC, Coates JD (2015). „Acidobacteria phyl. nov.“. In Whitman WB (red.). Bergey's Manual of Systematics of Archaea and Bacteria. John Wiley & Sons. doi:10.1002/9781118960608.pbm00001.
↑ Kuske CR; Barns SM; Busch JD (1 September 1997). „Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions“. Appl. Environ. Microbiol. 63 (9): 3614–21. PMC 168668. PMID 9293013.
↑ Liesack, Werner; Bak, Friedhelm; Kreft, Jan-Ulrich; Stackebrandt, E. (30 June 1994). „Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds“. Archives of Microbiology. 162 (1–2): 85–90. doi:10.1007/BF00264378. PMID 8085918.
↑ Coates, J. D.; Ellis, D. J.; Gaw, C. V.; Lovley, D. R. (1 October 1999). „Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer“. International Journal of Systematic Bacteriology. 49 (4): 1615–1622. doi:10.1099/00207713-49-4-1615. PMID 10555343.
↑ Fukunaga, Y; Kurahashi, M; Yanagi, K; Yokota, A; Harayama, S (November 2008). „Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'“. International Journal of Systematic and Evolutionary Microbiology. 58 (Pt 11): 2597–2601. doi:10.1099/ijs.0.65589-0. PMID 18984699.
↑ Kulichevskaya, IS; Suzina, NE; Liesack, W; Dedysh, SN (February 2010). „Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria“. International Journal of Systematic and Evolutionary Microbiology. 60 (Pt 2): 301–6. doi:10.1099/ijs.0.013250-0. PMID 19651730.
↑ Eichorst SA; Breznak JA; Schmidt TM (2007). „Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria“. Appl. Environ. Microbiol. 73 (8): 2708–17. doi:10.1128/AEM.02140-06. PMC 1855589. PMID 17293520.
↑ Kishimoto, Noriaki; Kosako, Yoshimasa; Tano, Tatsuo (31 December 1990). „Acidobacterium capsulatum gen. nov., sp. nov.: An acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment“. Current Microbiology. 22 (1): 1–7. doi:10.1007/BF02106205.

Nuorodos

[Barns2007-1] Barns SM; Cain EC; Sommerville L; Kuske CR (2007). „Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum“. Appl. Environ. Microbiol. 73 (9): 3113–6. doi:10.1128/AEM.02012-06. PMC 1892891. PMID 17337544.

[Quaiser-2] 2,0 ^2,1 Quaiser A; Ochsenreiter T; Lanz C; et al. (2003). „Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics“. Mol. Microbiol. 50 (2): 563–75. doi:10.1046/j.1365-2958.2003.03707.x. PMID 14617179.

[Rappe-3] Rappe, M. S.; Giovannoni, S. J. (2003). „The Uncultured Microbial Majority“. Annual Review of Microbiology. 57: 369–394. doi:10.1146/annurev.micro.57.030502.090759. PMID 14527284.

[Bergey-4] Thrash JC, Coates JD (2015). „Acidobacteria phyl. nov.“. In Whitman WB (red.). Bergey's Manual of Systematics of Archaea and Bacteria. John Wiley & Sons. doi:10.1002/9781118960608.pbm00001.

[Kuske1997-5] Kuske CR; Barns SM; Busch JD (1 September 1997). „Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions“. Appl. Environ. Microbiol. 63 (9): 3614–21. PMC 168668. PMID 9293013.

[pmid8085918-6] Liesack, Werner; Bak, Friedhelm; Kreft, Jan-Ulrich; Stackebrandt, E. (30 June 1994). „Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds“. Archives of Microbiology. 162 (1–2): 85–90. doi:10.1007/BF00264378. PMID 8085918.

[pmid10555343-7] Coates, J. D.; Ellis, D. J.; Gaw, C. V.; Lovley, D. R. (1 October 1999). „Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer“. International Journal of Systematic Bacteriology. 49 (4): 1615–1622. doi:10.1099/00207713-49-4-1615. PMID 10555343.

[pmid18984699-8] Fukunaga, Y; Kurahashi, M; Yanagi, K; Yokota, A; Harayama, S (November 2008). „Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'“. International Journal of Systematic and Evolutionary Microbiology. 58 (Pt 11): 2597–2601. doi:10.1099/ijs.0.65589-0. PMID 18984699.

[pmid19651730-9] Kulichevskaya, IS; Suzina, NE; Liesack, W; Dedysh, SN (February 2010). „Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria“. International Journal of Systematic and Evolutionary Microbiology. 60 (Pt 2): 301–6. doi:10.1099/ijs.0.013250-0. PMID 19651730.

[Eichorst2007-10] Eichorst SA; Breznak JA; Schmidt TM (2007). „Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria“. Appl. Environ. Microbiol. 73 (8): 2708–17. doi:10.1128/AEM.02140-06. PMC 1855589. PMID 17293520.

[11] Kishimoto, Noriaki; Kosako, Yoshimasa; Tano, Tatsuo (31 December 1990). „Acidobacterium capsulatum gen. nov., sp. nov.: An acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment“. Current Microbiology. 22 (1): 1–7. doi:10.1007/BF02106205.

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